Re: Ideas for building a system that parses medical research publications/articles

Στις 5/6/21 6:34 μ.μ., ο/η Adrian Klaver έγραψε:
> On 6/5/21 2:49 AM, Achilleas Mantzios wrote:
>> Hello
>>
>> I am imagining a system that can parse papers from various sources 
>> (web/files/etc) and in various formats (text, pdf, etc) and can store 
>> metadata for this paper ,some kind of global ID if applicable, 
>> authors, areas of research, whether the paper is "new", 
>> "highlighted", "historical", type (e.g. Case reports, Clinical 
>> trials), symptoms (e.g. tics, GI pain, psychological changes, 
>> anxiety, ), and other key attributes (I guess dynamic), it must be 
>> full text searchable, etc.
>>
>> I am at the very beginning in this and it is done on a fully 
>> volunteer basis.
>>
>> Lots of questions : is there any scientific/scholar analysis software 
>> already available? If yes and is really good and open source , then 
>> this will influence the rest of decisions. Otherwise , I'll have to 
>> form a team that can write one, in this case I'll have to decide DB, 
>> language, etc. I work 20 years with pgsql so it is the natural choice 
>> for any kind of data, I just ask this for the sake of completeness.
>>
>> All ideas welcome.
>
> A quick search found this:
>
> https://solutionsreview.com/data-management/the-best-open-source-data-catalog-tools-to-consider/ 
>
>
> Might be a good starting point on what is already out there.

This is interesting, so the keywords are "Data Catalog" ?

>
> There is also this:
>
> The Directory of Open Access Journals
> https://doaj.org/
>
This seems very very poor. Just try a search there and then repeat in 
PMC (PubMed Central).
> It seems to be a service, not downloadable software.
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